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  Maria Anisimova, Gina M. Cannarozzi, David Liberles, Finding the balance between the mathematical and biological optima in multiple sequence alignment, under revision for Trends in Evolutionary Biology, 2010.

Gina M. Cannarozzi, Mahmadou Faty, Nicol N. Schraudolph, Alexander Roth, Peter von Rohr, Markus Friberg, Pedro Gonnet, Gaston. H. Gonnet, Yves Barral, A role for codon in translation dynamics, Cell, Volume 141, Issue 2, 355-367, 16 April 2010.

Adrian Schneider, Gina M. Cannarozzi A Schneider and GM Cannarozzi, Support Patterns from Different Outgroups Provide a Strong Phylogenetic Signal, Molecular Biology and Evolution 26(6): 1259-1272, 2009.

Gina M. Cannarozzi, Adrian Schneider, Gaston. H. Gonnet, (2007) A Phylogenomic Study of Human, Dog, and Mouse. PLoS Comput Biol 3(1): e2 link
This article in the popular press:
Sueddeutsche Zeitung, November 28, 2006: Hundsverwandschaft - Saeuger-Stammbaum neu geordnet. pdf
ETH Life, December 22, 2006: Auf den Hund gekommen. ETH Life. link
Mittelland Zeitung, January 11, 2007: Die lieben Verwandten. pdf

Adrian Schneider, Gaston H. Gonnet, Gina M. Cannarozzi, (2007): SynPAM - a Distance Measure Based on Synonymous Codon Substitutions, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 4(4): 553-560. link

Tal Pupko, Adi Doron-Faigenboim, David A. Liberles and Gina M. Cannarozzi, book chapter in Ancestral Sequence Reconstruction, Oxford University Press, 2007. link

Gina M. Cannarozzi, Adrian Schneider, Gaston. H. Gonnet, Probabilistic Ancestral Sequences Based on the Markovian Model of Evolution- Algorithms and Applications, book chapter in Ancestral Sequence Reconstruction, Oxford University Press, 2007. link

Victor Goetsch, Gaston Gonnet, Gina M. Cannarozzi, Phylogenetic Tree Construction using Gap Information of Multiple Sequence Alignments, in preparation.

Adrian Schneider Gaston Gonnet, Gina M. Cannarozzi, Synonymous Codon Substitution Matrices, V. N. Alexandrov et al. (Eds): ICCS 2006, Part II, LNCS 3992, p630-637, 2006. link

Christophe Dessimoz, Gina M. Cannarozzi, Manuel Gil, Daniel Margadant, Alexander Roth, Adrian Schneider, and Gaston Gonnet, OMA, a Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements, A. McLysaght et al. (Eds): RECOMB 2005 Workshop on Comparative Genomics, LNBI 3687, pp. 61-72, 2005. link

Adrian Schneider, Gina M. Cannarozzi, Gaston Gonnet, Empirical codon substitution matrix. BMC Bioinformatics 2005, 6:134 link

Peter von Rohr, Markus Friberg, Gina Cannarozzi, Gaston Gonnet, Dept. Computer Science, February - March Research Focus, 2004

Gina M. Cannarozzi, Michael T. Hallett, Jan Norberg, Xianghong Zhu, A cross-comparison of a large dataset of genes, Bioinformatics, 16 (7): 654-655 JUL 2000.

Dietlind Gerloff, Gina M. Cannarozzi, Marcin Joachimiak, Fred E. Cohen, David Schreiber, and Steven A. Benner, Evolutionary, Mechanistic and Predictive Analyses of the Hydroxymethyldihydropterin Pyrophosphokinase Family of Proteins. Biochemical and Biophysical Research Communications 254, 70-76 (1999).

Dietlind Gerloff, Marcin Joachimiak, Fred E. Cohen, Gina M. Cannarozzi, S. G. Chamberlin and Steven A. Benner, (1998). Structure prediction in a post-genomic environment: a secondary and tertiary structural model for the initiation factor 5A family Biochem. Biophys. Res. Comm. 251, 173-181.

Steven A. Benner, Gina M. Cannarozzi, Marcel Turcotte, Dietlind Gerloff, Gareth Chelvanayagam, Bona Fide Predictions of Protein Secondary Structure using Transparent Analyses of Multiple Sequence Alignments, Chemical Reviews, 97 (8): 2725-2843 DEC 1997.

M. Traikia, D. B. Langlais, Gina M. Cannarozzi, and P. F. Devaux, High resolution spectra of liposomes using MAS NMR: the case of intermediate size vesicles, Journal of Magnetic Resonance Vol. 125, No. 1, p140-144.

Gina M. Cannarozzi, G. H. Meresi, R. L. Vold, and R. R. Vold , Conformation and Stability of Alkane/Urea Inclusion Compounds: Evidence from 2H NMR spectroscopy, J. Phys. Chem. 95, 1525 (1991).