Student Projects


  At Google scholar
At OrcID link

Waterlogging affects plant morphology and the expression of key genes in tef Gina Cannarozzi, Annett Weichert, Mirjam Schnell, Celia Ruiz, Svenja Bossard, Regula Bloesch, Sonia Plaza-Wuethrich, Solomon Chanyalew, Kebebew Assefa, Zerihun Tadele under revision.

Identification of miRNAs linked with the drought response of tef [Eragrostis tef (Zucc.) Trotter] Federico Martinelli, Gina Cannarozzi, Bipin Balan, Fredy Siegrist, Annett Weichert, Regula Bloesch, Zerihun Tadele Journal of Plant Physiology, accepted 2018.

Technology generation to dissemination: lessons learned from the tef improvement project G Cannarozzi, S Chanyalew, K Assefa, A Bekele, R Bloesch, A Weichert, Dominik Klauser, Sonia Plaza-Wuethrich, Korinna Esfeld, Moritz Joest, Abiel Rindisbacher, Habte Jifar, Victoria Johnson-Chadwick, Ermias Abate, Wuyan Wang, Rizqah Kamies, Negussu Husein, Worku Kebede, Kidist Tolosa, Yazachew Genet, Kidu Gebremeskel, Brikti Ferede, Firew Mekbib, Federico Martinelli, Hans Christian Pedersen, Suhail Rafudeen, Shimelis Hussein, Muluneh Tamiru, Naomi Nakayama, Mike Robinson, Ian Barker, Samuel Zeeman, Zerihun Tadele Euphytica 214 (2), 31 2018

A Proteomic Approach to Investigate the Drought Response in the Orphan Crop Eragrostis tef R Kamies, JM Farrant, Z Tadele, G Cannarozzi, MS Rafudeen Proteomes 5 (4), 32 1 2017

Identification and characterization of durum wheat microRNAs in leaf and root tissues V Fileccia, E Bertolini, P Ruisi, D Giambalvo, AS Frenda, G Cannarozzi, Zerihun Tadele, Cristina Crosatti, Federico Martinelli Functional & integrative genomics 17 (5), 583-598 1 2017

Gibberellin deficiency confers both lodging and drought tolerance in small cereals S Plaza-Wuehrich, R Bloesch, A Rindisbacher, G Cannarozzi, Z Tadele Frontiers in plant science 7, 643, 2016.

The SIB Swiss Institute of Bioinformatics resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2015

Genetic diversity in tef [Eragrostis tef (Zucc.) Trotter] Kebebew Assefa, Gina Cannarozzi, Dejene Girma, Rizqah Kamies, Solomon Chanyalew, Sonia Plaza-Wuthrich, Regula Bloesch, Abiel Rindisbacher, Suhail Rafudeen and Zerihun Tadele Front. Plant Sci. 2015 link

Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef) G Cannarozzi, S Plaza-Wuethrich, K Esfeld, S Larti, YS Wilson, D Girma, Edouard de Castro, Solomon Chanyalew, Regula Bloesch, Laurent Farinelli, Eric Lyons, Michel Schneider, Laurent Falquet, Cris Kuhlemeier, Kebebew Assefa, Zerihun Tadele BMC genomics 15 (1), 581, 2014. link .

Semi-dwarfism and lodging tolerance in tef (Eragrostis tef) is linked to a mutation in the alpha-Tubulin 1 gene Moritz Jost, Korinna Esfeld, Agata Burian, Gina Cannarozzi, Solomon Chanyalew, Cris Kuhlemeier, Kebebew Assefa, Zerihun Tadele. 2015. Journal of Experimental Botany 66(3), 933-944, 2014 link

The origins and progress of genomics research on Tef (Eragrostis tef) D Girma, K Assefa, S Chanyalew, G Cannarozzi, C Kuhlemeier, Z Tadele Plant Biotechnology Journal 12 (5), 534-540, 2014 link

Scp160p is required for translational efficiency of codon-optimized mRNAs in yeast WD Hirschmann, H Westendorf, A Mayer, G Cannarozzi, P Cramer, Ralf-Peter Jansen 2014. Nucleic acids research 42 (6), 4043-4055 link

Genetic and phenotypic diversity in selected genotypes of tef [Eragrostis tef (Zucc.)] S Plaza-Wuthrich, G Cannarozzi, Z Tadele African Journal of Agricultural Research 2013, 8 (12), 1041-1049 link

Haim Ashkenazy, Osnat Penn, Adi Doron-Faigenboim, Ofir Cohen, Gina Cannarozzi, Oren Zomer, Tal Pupko, FastML: a web server for probabilistic reconstruction of ancestral sequences, Nucleic Acids Res. 2012 July; 40 (Web Server issue): W580-W584. link

Maria Anisimova, Gina M. Cannarozzi, David Liberles, Finding the balance between the mathematical and biological optima in multiple sequence alignment, Trends in Evolutionary Biology, 2:e7, 2010. link

Gina M. Cannarozzi, Mahmadou Faty, Nicol N. Schraudolph, Alexander Roth, Peter von Rohr, Markus Friberg, Pedro Gonnet, Gaston. H. Gonnet, Yves Barral, A role for codon in translation dynamics, Cell, Volume 141, Issue 2, 355-367, 16 April 2010. link

Adrian Schneider, Gina M. Cannarozzi A Schneider and GM Cannarozzi, Support Patterns from Different Outgroups Provide a Strong Phylogenetic Signal, Molecular Biology and Evolution 26(6): 1259-1272, 2009. link

Gina M. Cannarozzi, Adrian Schneider, Gaston. H. Gonnet, (2007) A Phylogenomic Study of Human, Dog, and Mouse. PLoS Comput Biol 3(1): e2 link
This article in the popular press:
Sueddeutsche Zeitung, November 28, 2006: Hundsverwandschaft - Saeuger-Stammbaum neu geordnet. pdf
ETH Life, December 22, 2006: Auf den Hund gekommen. ETH Life. link
Mittelland Zeitung, January 11, 2007: Die lieben Verwandten. pdf

Adrian Schneider, Gaston H. Gonnet, Gina M. Cannarozzi, (2007): SynPAM - a Distance Measure Based on Synonymous Codon Substitutions, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 4(4): 553-560. link

Victor Goetsch, Gaston Gonnet, Gina M. Cannarozzi, Phylogenetic Tree Construction using Gap Information of Multiple Sequence Alignments, in preparation.

Adrian Schneider Gaston Gonnet, Gina M. Cannarozzi, Synonymous Codon Substitution Matrices, V. N. Alexandrov et al. (Eds): ICCS 2006, Part II, LNCS 3992, p630-637, 2006. link

Christophe Dessimoz, Gina M. Cannarozzi, Manuel Gil, Daniel Margadant, Alexander Roth, Adrian Schneider, and Gaston Gonnet, OMA, a Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements, A. McLysaght et al. (Eds): RECOMB 2005 Workshop on Comparative Genomics, LNBI 3687, pp. 61-72, 2005. link

Adrian Schneider, Gina M. Cannarozzi, Gaston Gonnet, Empirical codon substitution matrix. BMC Bioinformatics 2005, 6:134 link

Peter von Rohr, Markus Friberg, Gina Cannarozzi, Gaston Gonnet, Dept. Computer Science, February - March Research Focus, 2004

Gina M. Cannarozzi, Michael T. Hallett, Jan Norberg, Xianghong Zhu, A cross-comparison of a large dataset of genes, Bioinformatics, 16 (7): 654-655 JUL 2000.

Dietlind Gerloff, Gina M. Cannarozzi, Marcin Joachimiak, Fred E. Cohen, David Schreiber, and Steven A. Benner, Evolutionary, Mechanistic and Predictive Analyses of the Hydroxymethyldihydropterin Pyrophosphokinase Family of Proteins. Biochemical and Biophysical Research Communications 254, 70-76 (1999).

Dietlind Gerloff, Marcin Joachimiak, Fred E. Cohen, Gina M. Cannarozzi, S. G. Chamberlin and Steven A. Benner, (1998). Structure prediction in a post-genomic environment: a secondary and tertiary structural model for the initiation factor 5A family Biochem. Biophys. Res. Comm. 251, 173-181.

Steven A. Benner, Gina M. Cannarozzi, Marcel Turcotte, Dietlind Gerloff, Gareth Chelvanayagam, Bona Fide Predictions of Protein Secondary Structure using Transparent Analyses of Multiple Sequence Alignments, Chemical Reviews, 97 (8): 2725-2843 DEC 1997.

M. Traikia, D. B. Langlais, Gina M. Cannarozzi, and P. F. Devaux, High resolution spectra of liposomes using MAS NMR: the case of intermediate size vesicles, Journal of Magnetic Resonance Vol. 125, No. 1, p140-144.

Gina M. Cannarozzi, G. H. Meresi, R. L. Vold, and R. R. Vold , Conformation and Stability of Alkane/Urea Inclusion Compounds: Evidence from 2H NMR spectroscopy, J. Phys. Chem. 95, 1525 (1991).

Book Chapters

Book Chapters and Encyclopedia Entries Alexander Roth, Maria Anisimova, Gina Cannarozzi, Measures of Codon Usage Bias, in Codon Evolution Gina M. Cannarozzi and Adrian Schneider, editors, 2012, Oxford University Press.

Adrian Schneider and Gina Cannarozzi, Empircal Models of Codon Evolution, in Codon Evolution Gina M. Cannarozzi and Adrian Schneider, editors, 2012, Oxford University Press.

Gebeshuber I.C. and Cannarozzi G. (2010) Nanologues, in: Encyclopedia of Nanoscience and Society, (Eds. Guston D. and Golson J.G.), 1st edition (July 14, 2010), Sage Publications, CA, USA, ISBN-10: 1412969875, ISBN-13: 978-1412969871, 493-494.

Tal Pupko, Adi Doron-Faigenboim, David A. Liberles and Gina M. Cannarozzi, Probabilistic models and their impact on the accuracy of reconstructed ancestral protein sequences, book chapter in Ancestral Sequence Reconstruction, Oxford University Press, 2007.

Gina M. Cannarozzi, Adrian Schneider, Gaston. H. Gonnet, Probabilistic Ancestral Sequences Based on the Markovian Model of Evolution- Algorithms and Applications, book chapter in Ancestral Sequence Reconstruction, Oxford University Press, 2007.


Codon Evolution Gina M. Cannarozzi and Adrian Schneider, editors, 2012, Oxford University Press